Rosetta RNA_Denovo Protocol

[Submit RNA_Denovo task]

[RNA Denovo Queue]

[RNA Denovo Documentation]

Please cite the following article when referring to results from our ROSIE server:

  1. Das, R., Karanicolas, J., and Baker, D. (2010), "Atomic accuracy in predicting and designing noncanonical RNA structure". Nature Methods 7:291-294. Link [This is the primary citation for these algorithms]
  2. Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R., "Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)". PLoS One. 2013 May 22;8(5):e63906. doi: 10.1371/journal.pone.0063906. Print 2013. Link

Additional references of interest:

RNA modeling tools developed by the Das lab at Stanford